JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DRC7_chr16_57689806_57736805	0/0	c0011	2625	4	0	3	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0012	2625	4	0	0	4	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0013	2625	3	3	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0014	2625	3	1	0	0	0	2	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0015	2625	3	3	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0016	2625	2	2	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0017	2625	2	2	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0018	2625	2	0	0	2	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0019	2625	1	0	1	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0020	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0021	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0022	2625	1	0	0	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0023	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0024	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0025	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0026	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0027	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0028	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0029	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0030	2625	1	0	0	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0031	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0032	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0033	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0034	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0035	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0036	2663	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0037	2625	1	0	1	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0038	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0039	2654	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0040	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0041	2625	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0042	2625	1	0	0	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0043	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0044	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	c0045	2625	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRD1_chr5_175435036_175449182	0/1	c0001	1341	457	98	81	211	18	48	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	c0002	1341	22	0	0	22	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	1/0	c0003	1341	4	0	3	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	c0004	1341	2	2	0	0	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	c0005	1341	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	c0006	1161	1	0	0	0	0	1	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	c0007	1341	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	c0008	1341	1	0	0	0	0	1	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	c0009	1358	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD2_chr11_113404605_113480398	1/0	c0001	1332	147	39	22	65	3	17	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0002	1332	96	17	19	52	0	8	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/1	c0003	1332	63	4	30	14	5	9	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0004	1332	13	0	2	8	0	3	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0005	1332	5	5	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0006	1332	5	5	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398