JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DRD2_chr11_113404605_113480398	0/0	c0007	1332	3	3	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0008	1332	3	2	1	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0009	1332	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0010	1332	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0011	1332	1	1	0	0	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0012	1332	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	c0013	1332	1	0	0	0	0	1	copy fasta	DRD2	chr11	113404605	113480398
DRD3_chr3_114122580_114184052	0/1	c0001	1203	167	18	30	82	11	25	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0002	1203	144	54	30	43	2	15	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0003	1203	13	7	2	2	0	2	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	1/0	c0004	1203	9	8	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0005	1203	8	0	0	7	0	1	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0006	1203	5	3	1	0	0	1	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0007	1203	3	0	2	0	1	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0008	1203	2	1	1	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0009	1203	2	0	0	2	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0010	1203	1	0	0	1	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0011	1203	1	1	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0012	1203	1	0	0	1	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0013	1203	1	1	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0014	1203	1	1	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0015	1203	1	0	1	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	c0016	1203	1	0	1	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD4_chr11_632269_645706	0/0	c0001	1260	207	32	30	110	5	30	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/1	c0002	1404	40	18	14	3	3	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0003	1248	37	0	4	28	1	4	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0004	1164	34	2	4	22	3	3	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0005	1260	16	10	4	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0006	1260	7	6	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0007	1261	6	0	1	3	0	2	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0008	1260	5	5	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0009	1404	5	5	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0010	1296	4	0	0	4	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0011	1405	4	0	2	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0012	1260	4	4	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0013	1260	3	3	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0014	1260	3	3	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0015	1404	3	0	3	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0016	1260	2	0	2	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0017	1308	2	0	0	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0018	1212	2	0	0	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0019	1308	2	0	1	0	0	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0020	1356	2	0	0	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0021	1404	2	0	2	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0022	1404	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0023	1152	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0024	1200	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0025	1392	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0026	1392	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0027	1260	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706