JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DRD4_chr11_632269_645706	0/0	c0028	1260	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0029	1260	1	0	0	0	0	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0030	1261	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0031	1261	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0032	1260	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0033	1164	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0034	1212	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0035	1356	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0036	1260	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0037	1356	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0038	1308	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0039	1260	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0040	1404	1	0	0	0	0	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0041	1359	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0042	1406	1	0	0	0	0	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0043	1404	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0044	1308	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0045	1405	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0046	1452	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0047	1548	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0048	1260	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0049	1164	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0050	1260	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0051	1260	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	c0052	1261	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD5_chr4_9776634_9789009	0/0	c0001	1434	252	61	53	106	11	21	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	1/1	c0002	1434	169	30	22	88	7	20	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0003	1434	17	0	0	14	0	3	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0004	1434	4	4	0	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0005	1434	3	0	0	3	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0006	1434	3	0	3	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0007	1434	2	0	0	1	0	1	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0008	1434	1	0	0	1	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0009	1434	1	1	0	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0010	1434	1	0	0	0	0	1	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	c0011	1434	1	0	0	1	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRG1_chr22_31394604_31439452	1/1	c0001	1104	347	83	59	148	14	41	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	c0002	1104	1	1	0	0	0	0	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	c0003	1104	1	0	0	0	0	1	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	c0004	1104	1	0	1	0	0	0	copy fasta	DRG1	chr22	31394604	31439452
DRG2_chr17_18082948_18112969	1/1	c0001	1095	297	63	39	151	8	34	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0002	1095	77	17	34	12	10	4	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0003	1095	22	0	0	21	0	1	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0004	1095	9	9	0	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0005	1095	3	2	1	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0006	1095	3	0	3	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0007	1095	1	0	0	0	0	1	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0008	1095	1	0	1	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0009	1095	1	0	1	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0010	1095	1	0	1	0	0	0	copy fasta	DRG2	chr17	18082948	18112969