JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DRG2_chr17_18082948_18112969	0/0	c0011	1095	1	1	0	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0012	1095	1	0	0	1	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	c0013	1095	1	0	0	1	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRGX_chr10_49359066_49401089	1/1	c0001	792	365	95	59	159	16	34	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	c0002	792	1	0	0	1	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	c0003	792	1	0	1	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	c0004	792	1	1	0	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRICH1_chr22_23603452_23637321	1/0	c0001	690	302	64	55	134	13	35	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/1	c0002	687	62	9	10	38	1	3	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0003	687	53	4	10	32	1	6	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0004	690	5	5	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0005	690	3	3	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0006	693	3	3	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0007	690	3	0	0	3	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0008	690	3	3	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0009	690	2	1	1	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0010	687	2	0	2	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0011	690	2	2	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0012	687	2	0	0	1	1	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0013	693	1	0	1	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0014	690	1	0	1	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0015	690	1	1	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	c0016	690	1	1	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DROSHA_chr5_31395494_31537093	1/0	c0001	4125	81	18	18	35	4	5	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/1	c0002	4125	78	13	13	42	2	7	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0003	4125	45	15	1	27	2	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0004	4125	29	1	7	7	3	11	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0005	4125	28	0	0	22	0	6	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0006	4125	9	9	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0007	4125	8	8	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0008	4125	7	6	1	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0009	4125	4	4	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0010	4125	3	3	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0011	4125	2	2	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0012	4125	2	2	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0013	4125	2	0	0	2	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0014	4125	2	0	1	0	1	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0015	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0016	4125	1	0	1	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0017	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0018	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0019	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0020	4125	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0021	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0022	4125	1	0	1	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0023	4125	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0024	4125	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0025	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0026	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0027	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093