JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DROSHA_chr5_31395494_31537093	0/0	c0028	4125	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0029	4125	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0030	4125	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0031	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0032	4125	1	0	1	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0033	4125	1	0	0	0	0	1	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0034	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0035	4125	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	c0036	4088	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DRP2_chrX_101214786_101269502	1/0	c0001	2874	201	52	33	85	7	23	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/1	c0002	2874	37	12	11	7	5	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0003	2874	6	3	1	1	1	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0004	2874	3	3	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0005	2874	3	3	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0006	2874	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0007	2874	1	0	1	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0008	2874	1	0	0	0	0	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0009	2874	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0010	2874	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0011	2874	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0012	2873	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0013	2874	1	0	0	0	0	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0014	2874	1	0	1	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	c0015	2874	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DSC1_chr18_31124236_31167856	1/0	c0001	2685	95	28	15	30	7	14	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0002	2685	75	0	17	53	0	5	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0003	2685	60	10	17	17	6	10	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0004	2685	34	0	11	21	1	1	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0005	2685	15	0	2	11	0	2	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0006	2685	14	0	1	10	0	3	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/1	c0007	2685	11	8	1	0	0	1	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0008	2685	11	11	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0009	2685	9	9	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0010	2685	7	0	0	7	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0011	2685	4	1	0	0	1	2	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0012	2685	4	4	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0013	2685	4	4	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0014	2685	3	3	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0015	2685	3	3	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0016	2685	3	3	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0017	2685	2	2	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0018	2685	2	0	0	2	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0019	2685	2	2	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0020	2685	2	2	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0021	2685	2	2	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0022	2685	2	0	2	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0023	2685	2	0	1	0	1	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0024	2685	1	0	0	1	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0025	2685	1	0	1	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0026	2685	1	0	1	0	0	0	copy fasta	DSC1	chr18	31124236	31167856