Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRB1_chr8_142444649_142550007	0/0	c0026	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0027	4755	1	0	0	0	1	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0028	4755	1	0	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0029	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0030	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0031	4755	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0032	4755	1	0	0	0	1	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0033	4755	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0034	4755	1	0	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0035	4755	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0036	4755	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0037	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0038	4755	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0039	4755	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0040	4755	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	c0041	4755	1	0	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB2_chr1_31722117_31769340	1/0	c0001	4758	79	13	14	37	5	9	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0002	4758	61	40	5	11	2	3	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/1	c0003	4758	36	0	10	15	3	7	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0004	4758	36	3	6	14	3	10	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0005	4758	10	9	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0006	4758	8	7	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0007	4758	8	0	7	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0008	4758	7	0	0	7	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0009	4758	5	4	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0010	4758	5	4	0	0	1	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0011	4758	3	3	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0012	4758	2	1	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0013	4758	2	0	0	2	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0014	4758	2	2	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0015	4758	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0016	4758	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0017	4758	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0018	4758	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0019	4758	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0020	4758	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0021	4758	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0022	4758	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0023	4758	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0024	4758	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0025	4758	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0026	4758	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0027	4758	1	0	0	0	0	1	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0028	4758	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0029	4758	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	c0030	4758	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB3_chr6_68630282_69394506	0/0	c0001	4569	50	35	6	0	2	7	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	c0002	4569	30	14	9	2	4	1	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/1	c0003	4569	25	6	5	5	2	6	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	1/0	c0004	4569	6	1	1	3	0	0	copy fasta	ADGRB3	chr6	68630282	69394506