JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSC1_chr18_31124236_31167856	0/0	c0027	2685	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0028	2685	1	0	0	1	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0029	2685	1	0	0	1	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0030	2685	1	0	1	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0031	2685	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0032	2685	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0033	2685	1	0	0	0	0	1	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0034	2685	1	0	0	0	0	1	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	c0035	2685	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC2_chr18_31053840_31107421	1/0	c0001	2706	240	36	48	114	6	35	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/1	c0002	2706	56	24	11	18	2	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0003	2706	46	8	11	21	1	5	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0004	2706	10	1	3	1	2	3	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0005	2706	10	9	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0006	2706	8	7	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0007	2706	2	2	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0008	2706	2	0	2	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0009	2706	1	0	0	0	0	1	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0010	2706	1	0	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0011	2706	1	0	0	1	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0012	2706	1	1	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0013	2706	1	0	0	0	1	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	c0014	2706	1	0	0	1	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC3_chr18_30984365_31047742	0/0	c0001	2691	125	24	12	73	1	15	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/1	c0002	2691	82	30	13	31	1	6	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	1/0	c0003	2691	70	14	24	16	9	6	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0004	2691	61	2	16	34	2	7	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0005	2691	18	0	7	7	2	2	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0006	2691	10	10	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0007	2691	4	0	0	0	0	4	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0008	2691	3	3	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0009	2691	3	0	0	3	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0010	2691	2	0	0	2	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0011	2691	2	0	2	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0012	2691	2	2	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0013	2691	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0014	2691	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0015	2691	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0016	2691	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0017	2691	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0018	2691	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0019	2691	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0020	2691	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0021	2691	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	c0022	2691	1	0	0	0	1	0	copy fasta	DSC3	chr18	30984365	31047742
DSCAML1_chr11_117422772_117802216	0/0	c0001	6162	15	5	2	3	2	3	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0002	6162	14	10	1	1	2	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0003	6162	12	1	5	5	1	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0004	6162	10	3	5	2	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0005	6162	9	1	3	4	0	1	copy fasta	DSCAML1	chr11	117422772	117802216