JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSCAML1_chr11_117422772_117802216	0/0	c0056	6162	1	0	0	1	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0057	6162	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0058	6162	1	0	0	0	1	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0059	6162	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0060	6162	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0061	6162	1	0	0	1	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0062	6162	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0063	6162	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0064	6162	1	0	0	0	0	1	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0065	6162	1	0	0	1	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0066	6162	1	1	0	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0067	6162	1	0	0	1	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0068	6162	1	0	0	1	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	c0069	6162	1	0	1	0	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCC1_chr8_119828976_119860894	0/1	c0001	1182	234	69	55	65	11	33	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	1/0	c0002	1182	136	16	17	82	5	15	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	c0003	1182	3	3	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	c0004	1182	1	0	0	1	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	c0005	1182	1	1	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	c0007	1182	1	0	0	1	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	c0008	1182	1	1	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSEL_chr18_67501587_67521720	0/0	c0001	3639	217	40	35	110	4	28	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/1	c0002	3639	160	32	27	82	7	11	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0003	3639	14	13	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0004	3639	13	0	12	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0005	3639	6	5	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0006	3639	2	1	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0007	3639	1	0	0	0	1	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0008	3639	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0009	3639	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0010	3639	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0011	3639	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0012	3639	1	0	0	0	1	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0013	3639	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0014	3639	1	0	0	0	1	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	c0015	3639	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSE_chr6_116365947_116449861	0/1	c0001	2877	276	61	42	130	12	30	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0002	2877	51	11	17	16	3	4	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0003	2877	8	0	3	2	0	3	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	1/0	c0004	2877	6	1	1	1	2	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0005	2874	5	5	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0006	2877	5	5	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0007	2877	4	0	3	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0008	2877	3	0	1	0	1	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0009	2877	3	1	1	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0010	2877	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0011	2877	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0012	2877	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	c0013	2877	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861