JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSE_chr6_116365947_116449861	0/0	c0014	2877	1	1	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSG1_chr18_31313160_31364246	1/0	c0001	3150	119	11	18	73	5	11	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/1	c0002	3150	61	14	15	17	2	12	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0003	3150	16	5	1	8	0	2	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0004	3150	16	14	2	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0005	3150	11	3	0	6	1	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0006	3150	7	0	4	1	0	2	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0007	3150	5	5	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0008	3150	4	0	2	2	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0009	3150	4	4	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0010	3150	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0011	3150	3	1	1	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0012	3150	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0013	3150	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0014	3150	2	0	0	2	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0015	3150	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0016	3150	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0017	3150	2	0	1	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0018	3150	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0019	3150	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0020	3150	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0021	3150	2	0	2	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0022	3150	2	0	0	1	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0023	3150	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0024	3150	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0025	3150	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0026	3150	1	0	0	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0027	3150	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0028	3150	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0029	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0030	3150	1	0	1	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0031	3150	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0032	3150	1	0	1	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0033	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0034	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0035	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0036	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0037	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0038	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0039	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0040	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0041	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0042	3150	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0043	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0044	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0045	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0046	3150	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0047	3150	1	0	0	0	1	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0048	3150	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	c0049	3150	1	0	0	0	1	0	copy fasta	DSG1	chr18	31313160	31364246