JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSG2_chr18_31493177_31554008	1/0	c0001	3357	98	10	26	42	5	14	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/1	c0002	3357	79	5	16	43	5	9	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0003	3357	72	32	4	31	1	4	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0004	3357	22	0	0	21	0	1	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0005	3357	17	17	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0006	3357	15	13	2	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0007	3357	8	0	6	0	2	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0008	3357	6	0	0	6	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0009	3357	6	0	1	5	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0010	3357	5	4	1	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0011	3357	3	0	3	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0012	3357	3	3	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0013	3357	3	3	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0014	3357	2	2	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0015	3357	2	2	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0016	3357	2	0	0	0	0	2	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0017	3357	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0018	3357	1	0	0	0	0	1	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0019	3357	1	0	0	1	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0020	3357	1	0	0	0	1	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0021	3357	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0022	3357	1	0	0	1	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0023	3357	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0024	3357	1	0	1	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0025	3357	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0026	3357	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	c0027	3357	1	0	0	0	0	1	copy fasta	DSG2	chr18	31493177	31554008
DSG3_chr18_31442741_31483702	0/0	c0001	3000	258	51	53	121	7	26	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0002	3000	31	7	0	18	0	6	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0003	3000	12	12	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0004	3000	9	9	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/1	c0005	3000	7	0	1	0	3	2	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0006	3000	5	2	2	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0007	3000	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0008	3000	2	0	2	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0009	3000	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0010	3000	2	0	2	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0011	3000	2	0	2	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0012	3000	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0013	3000	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0014	3000	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0015	3000	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0016	3000	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0017	3000	1	0	0	0	0	1	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	1/0	c0018	3000	1	0	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0019	3000	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0020	3000	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0021	3000	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0022	3000	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	c0023	3000	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702