JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSG3_chr18_31442741_31483702	0/0	c0024	3000	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG4_chr18_31371777_31419909	0/0	c0001	3123	96	11	18	59	3	5	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0002	3123	52	6	9	30	1	6	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0003	3123	34	6	9	15	0	4	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0004	3123	30	5	1	21	1	2	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0005	3123	17	7	0	10	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0006	3123	17	2	5	1	0	9	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/1	c0007	3123	15	4	4	2	2	2	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0008	3123	11	1	0	6	2	2	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0009	3123	7	7	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0010	3123	5	5	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	1/0	c0011	3123	4	0	2	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0012	3123	4	0	0	0	0	4	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0013	3123	4	2	0	2	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0014	3123	3	0	0	3	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0015	3123	3	0	0	3	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0016	3123	3	1	0	0	0	2	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0017	3123	3	2	0	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0018	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0019	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0020	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0021	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0022	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0023	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0024	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0025	3123	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0026	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0027	3123	1	0	1	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0028	3123	1	0	0	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0029	3123	1	0	0	1	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0030	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0031	3162	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0032	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0033	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0034	3123	1	0	0	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0035	3123	1	0	0	0	1	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0036	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0037	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0038	3123	1	0	0	1	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0039	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0040	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0041	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0042	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0043	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0044	3123	1	0	1	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	c0045	3123	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSN1_chr20_36746795_36778763	1/1	c0001	1071	317	68	74	116	16	41	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	c0002	1071	10	8	2	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	c0003	1071	3	3	0	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	c0004	1071	1	0	0	0	0	1	copy fasta	DSN1	chr20	36746795	36778763