JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSN1_chr20_36746795_36778763	0/0	c0005	1071	1	1	0	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSPP_chr4_87603529_87621873	0/0	c0001	3753	60	1	18	36	4	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0002	3798	56	1	5	49	1	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0003	3780	51	0	5	35	0	11	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0004	3906	39	6	5	24	0	4	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/1	c0005	3753	32	6	11	12	0	2	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0006	3771	23	20	3	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0007	3777	17	3	8	4	0	2	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0008	3777	13	0	0	13	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0009	3762	10	0	6	0	3	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0010	3753	9	1	3	0	2	3	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0011	3753	7	0	0	7	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0012	3735	6	6	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0013	3753	6	6	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0014	3759	6	0	1	5	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0015	3771	6	6	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0016	3753	6	0	0	2	1	3	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0017	3726	5	5	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0018	3726	5	4	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0019	3780	5	0	0	0	0	5	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0020	3699	4	1	3	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0021	3888	4	0	0	4	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0022	3744	4	0	0	4	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0023	3753	4	0	0	4	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0024	3765	4	4	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0025	3735	3	0	0	3	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0026	3744	3	0	2	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0027	3753	3	0	0	3	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0028	3717	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0029	3753	2	0	2	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0030	3888	2	0	0	0	0	2	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0031	4095	2	0	0	0	0	2	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0032	3735	2	0	0	2	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0033	3750	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0034	3762	2	0	0	1	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0035	3735	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0036	3753	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0037	3753	2	1	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0038	3765	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0039	3726	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0040	3726	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0041	3798	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0042	3780	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0043	3798	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0044	3780	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0045	3798	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0046	3627	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0047	3906	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0048	3888	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0049	3738	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873