JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSPP_chr4_87603529_87621873	0/0	c0050	3906	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0051	3924	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0052	3888	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0053	3888	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0054	3726	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0055	3750	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0056	3744	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	1/0	c0057	3906	1	0	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0058	3888	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0059	3717	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0060	3735	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0061	3813	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0062	3753	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0063	3780	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0064	3780	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0065	3861	1	0	0	0	1	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0066	3777	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0067	3753	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0068	3753	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0069	3753	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0070	3771	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0071	3807	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0072	3771	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0073	3771	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0074	3753	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	c0075	3753	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSP_chr6_7536671_7591714	0/0	c0001	8616	65	5	12	40	1	7	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0002	8616	43	14	4	22	1	2	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0003	8617	32	6	11	14	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0004	8616	32	5	12	6	1	8	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0005	8616	29	8	7	11	0	3	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0006	8616	14	4	2	7	1	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0007	8617	12	3	1	7	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0008	8617	11	0	1	10	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0009	8617	9	0	0	7	1	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0010	8616	9	2	1	3	0	3	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0011	8617	8	0	0	6	2	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0012	8616	8	7	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0013	8617	6	1	0	4	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0014	8617	5	0	0	5	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0015	8616	5	3	2	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0016	8616	5	0	0	5	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/1	c0017	8616	5	0	3	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0018	8617	4	0	0	4	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0019	8617	4	0	0	4	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0020	8616	4	4	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0021	8616	3	0	2	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0022	8616	3	1	2	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0023	8616	3	0	2	0	1	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0024	8616	3	1	1	1	0	0	copy fasta	DSP	chr6	7536671	7591714