JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSP_chr6_7536671_7591714	1/0	c0025	8616	3	0	0	0	2	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0026	8616	3	3	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0027	8616	3	0	2	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0028	8617	2	0	0	2	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0029	8617	2	2	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0030	8617	2	0	0	2	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0031	8617	2	0	0	0	0	2	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0032	8617	2	0	0	2	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0033	8616	2	2	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0034	8616	2	0	0	0	2	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0035	8616	2	0	1	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0036	8616	2	0	0	2	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0037	8617	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0038	8617	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0039	8617	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0040	8617	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0041	8617	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0042	8617	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0043	8617	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0044	8617	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0045	8617	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0046	8617	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0047	8617	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0048	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0049	8616	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0050	8616	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0051	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0052	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0053	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0054	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0055	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0056	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0057	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0058	8616	1	0	0	0	1	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0059	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0060	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0061	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0062	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0063	8616	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0064	8616	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0065	8616	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0066	8616	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0067	8616	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0068	8616	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0069	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0070	8616	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0071	8616	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0072	8616	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0073	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0074	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714