JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DSP_chr6_7536671_7591714	0/0	c0075	8616	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0076	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0077	8616	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0078	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0079	8616	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0080	8616	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0081	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0082	8616	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	c0083	8616	1	0	0	0	1	0	copy fasta	DSP	chr6	7536671	7591714
DSTN_chr20_17565075_17614919	1/1	c0001	498	348	94	66	144	8	34	copy fasta	DSTN	chr20	17565075	17614919
DSTYK_chr1_205137505_205216702	0/1	c0001	2790	170	49	36	62	7	15	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0002	2790	126	32	16	56	5	17	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0003	2790	15	0	3	10	0	2	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	1/0	c0004	2790	9	1	1	0	1	5	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0005	2790	7	0	5	0	2	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0006	2790	4	2	2	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0007	2790	4	3	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0008	2790	4	0	0	4	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0009	2790	1	0	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0010	2790	1	0	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0011	2790	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0012	2790	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0013	2790	1	0	0	0	0	1	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0014	2790	1	0	0	0	1	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0015	2790	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0016	2790	1	1	0	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	c0017	2790	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DST_chr6_56452996_56959830	0/0	c0001	23457	9	4	0	4	1	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0002	23457	5	4	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0003	23457	4	2	2	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0004	23457	4	4	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/1	c0005	23457	3	0	1	0	0	1	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0006	23457	3	0	0	3	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0007	23457	3	3	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0008	23457	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0009	23457	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0010	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0011	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0012	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0013	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0014	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0015	23457	1	0	0	0	1	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0016	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0017	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0018	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0019	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0020	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0021	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0022	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0023	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830