Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRB3_chr6_68630282_69394506	0/0	c0005	4569	5	2	3	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	c0006	4569	1	1	0	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	c0007	4569	1	0	1	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	c0008	4569	1	1	0	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	c0009	4569	1	0	1	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRD1_chr12_130948907_131146469	0/0	c0001	2625	52	10	14	19	3	6	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0002	2625	50	4	13	23	2	8	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0003	2625	43	14	13	7	3	6	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0004	2625	19	1	5	6	3	4	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0005	2625	10	7	1	2	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	1/0	c0006	2625	7	6	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0007	2625	5	4	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0008	2625	4	0	0	2	0	2	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0009	2625	4	1	0	2	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0010	2625	4	1	1	1	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0011	2625	2	0	1	0	1	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0012	2625	2	2	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0013	2625	2	2	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0014	2625	2	0	1	0	1	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0015	2625	2	0	2	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0016	2625	2	0	2	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0017	2625	2	0	2	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0018	2625	2	2	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0019	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0020	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0021	2625	1	0	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0022	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0023	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/1	c0024	2625	1	0	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0025	2625	1	0	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0026	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0027	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0028	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0029	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0030	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0031	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0032	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0033	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0034	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0035	2625	1	0	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0036	2625	1	0	0	0	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0037	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0038	2625	1	0	0	0	1	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0039	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0040	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0041	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0042	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0043	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0044	2625	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	c0045	2625	1	0	0	0	0	1	copy fasta	ADGRD1	chr12	130948907	131146469