JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DST_chr6_56452996_56959830	0/0	c0024	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0025	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0026	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0027	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0028	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0029	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0030	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0031	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0032	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0033	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0034	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	1/0	c0035	23457	1	0	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0036	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0037	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0038	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0039	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0040	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0041	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0042	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0043	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0044	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0045	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0046	23457	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0047	23457	1	0	0	0	0	1	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0048	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0049	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0050	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0051	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0052	23457	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0053	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0054	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0055	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0056	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0057	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	c0058	23457	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56609597_56647889	1/1	c0001	7950	159	32	26	78	6	15	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0002	7950	71	4	22	31	4	10	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0003	7950	14	0	1	10	0	3	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0004	7950	11	10	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0005	7950	8	8	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0006	7950	7	6	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0007	7950	5	5	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0008	7950	4	4	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0009	7950	4	0	2	0	2	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0010	7950	3	3	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0011	7950	3	3	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0012	7950	2	0	0	0	0	2	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0013	7950	2	0	2	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0014	7950	2	0	2	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0015	7950	2	0	0	2	0	0	copy fasta	DST	chr6	56609597	56647889