JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DST_chr6_56609597_56647889	0/0	c0016	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0017	7950	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0018	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0019	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0020	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0021	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0022	7950	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0023	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0024	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0025	7950	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0026	7950	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0027	7950	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0028	7950	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0029	7950	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0030	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0031	7950	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0032	7950	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0033	7969	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0034	7950	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0035	7950	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0036	7950	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0037	7950	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0038	7950	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0039	7950	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0040	7950	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0041	7950	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0042	7950	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0043	7950	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	c0044	7950	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DTD1_chr20_18583054_18771644	1/1	c0001	630	386	85	75	168	16	40	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	c0002	630	6	6	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	c0003	630	4	4	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	c0004	630	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	c0005	630	1	0	1	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD2_chr14_31441036_31462506	1/1	c0001	507	417	91	74	194	12	44	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	c0002	507	1	1	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTHD1_chr4_36276616_36352511	0/1	c0001	2721	68	11	15	38	0	3	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0002	2721	47	23	5	10	4	5	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0003	2721	29	12	5	11	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0004	2721	21	10	9	0	0	2	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0005	2721	15	7	2	5	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0006	2721	15	1	2	7	0	5	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0007	2721	11	2	5	2	2	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0008	2721	9	2	0	7	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0009	2721	8	1	2	3	1	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0010	2721	6	1	1	4	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0011	2721	6	1	1	3	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0012	2721	6	1	2	2	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0013	2721	6	0	6	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0014	2721	5	0	0	5	0	0	copy fasta	DTHD1	chr4	36276616	36352511