JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DTHD1_chr4_36276616_36352511	0/0	c0015	2721	5	0	0	2	2	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0016	2721	4	2	2	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0017	2721	4	1	1	1	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0018	2721	3	3	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0019	2721	3	3	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0020	2721	3	0	0	1	0	2	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0021	2721	2	2	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0022	2721	2	2	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0023	2721	2	2	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0024	2721	2	0	0	0	0	2	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	1/0	c0025	2721	2	0	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0026	2721	1	0	0	0	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0027	2721	1	0	0	0	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0028	2721	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0029	2721	1	0	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0030	2721	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0031	2721	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0032	2721	1	0	0	0	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0033	2721	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0034	2721	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0035	2721	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0036	2721	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0037	2721	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0038	2721	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0039	2721	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0040	2721	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0041	2721	1	0	0	0	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0042	2721	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0043	2721	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0044	2721	1	0	0	0	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0045	2721	1	0	0	0	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0046	2721	1	0	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0047	2721	1	0	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0048	2721	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	c0049	2721	1	0	0	0	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTL_chr1_212030748_212110013	0/1	c0001	2193	293	72	53	118	13	36	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0002	2193	48	0	7	32	2	7	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0003	2193	3	0	3	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0004	2193	3	3	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0005	2193	2	2	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0006	2193	2	0	0	2	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0007	2193	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	1/0	c0008	2193	1	0	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0009	2193	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0010	2193	1	0	0	1	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0011	2193	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0012	2193	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0013	2193	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0014	2193	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0015	2193	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013