JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DTL_chr1_212030748_212110013	0/0	c0016	2193	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0017	2193	1	0	0	0	1	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0018	2193	1	0	0	0	0	1	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	c0019	2193	1	0	0	1	0	0	copy fasta	DTL	chr1	212030748	212110013
DTNA_chr18_34705298_34896844	1/1	c0001	2313	103	58	21	4	2	16	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	c0002	2313	6	6	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	c0003	2313	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	c0004	2313	1	0	1	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	c0005	2313	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNBP1_chr6_15517807_15668028	1/1	c0001	1056	293	73	62	113	9	34	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	c0002	1056	12	11	1	0	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	c0003	1056	4	0	0	0	4	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	c0004	1056	3	2	1	0	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	c0005	1056	1	0	0	1	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	c0006	1056	1	0	0	0	1	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNB_chr2_25372243_25678577	1/1	c0001	1884	121	32	28	44	4	11	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	c0002	1884	42	25	10	0	3	4	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	c0003	1884	2	0	0	0	0	2	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	c0004	1884	1	0	0	0	1	0	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	c0005	1884	1	1	0	0	0	0	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	c0006	1884	1	0	0	0	0	1	copy fasta	DTNB	chr2	25372243	25678577
DTWD1_chr15_49616048_49661232	1/1	c0001	915	334	68	53	149	14	48	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	c0002	915	4	1	0	0	3	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	c0003	915	1	0	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	c0004	915	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	c0005	915	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	c0006	915	1	0	0	0	1	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD2_chr5_118831074_118993547	1/1	c0001	897	231	80	62	46	12	29	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	c0002	897	5	5	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	c0003	897	4	0	0	3	0	1	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	c0004	897	1	0	0	1	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	c0005	897	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTX1_chr12_113051730_113103025	1/1	c0001	1863	286	62	64	108	14	36	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0002	1863	14	0	1	9	0	4	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0003	1863	12	8	3	0	0	1	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0004	1863	9	8	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0005	1863	4	0	1	0	0	3	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0006	1863	3	3	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0007	1863	2	1	0	1	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0008	1863	2	0	1	0	0	1	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0009	1863	1	1	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0010	1863	1	0	0	0	0	1	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0011	1863	1	1	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0012	1863	1	1	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0013	1863	1	1	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	c0014	1863	1	0	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX2_chr7_76456709_76510991	0/0	c0001	1869	111	18	19	54	4	16	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0002	1869	44	3	17	16	2	6	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0003	1869	31	20	4	5	1	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/1	c0004	1869	25	5	11	1	2	5	copy fasta	DTX2	chr7	76456709	76510991