JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DTX2_chr7_76456709_76510991	0/0	c0005	1869	13	9	2	0	0	2	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0006	1869	9	8	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0007	1869	9	0	2	7	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0008	1869	5	5	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0009	1870	5	0	1	3	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0010	1869	3	0	0	0	1	2	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0011	1869	2	2	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0012	1869	2	1	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0013	1869	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0014	1870	1	0	0	1	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0015	1869	1	0	0	0	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0016	1869	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0017	1869	1	0	0	0	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0018	1869	1	0	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0019	1869	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0020	1869	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	1/0	c0021	1869	1	0	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0022	1869	1	0	0	0	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0023	1869	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0024	1869	1	0	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0025	1870	1	0	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0026	1870	1	0	0	1	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0027	1870	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0028	1869	1	0	0	1	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0029	1869	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0030	1869	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0031	1869	1	0	0	1	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0032	1869	1	0	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	c0033	1870	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX3L_chr3_122559338_122580203	0/1	c0001	2223	174	19	36	91	7	20	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	1/0	c0002	2223	103	42	20	25	3	12	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0003	2223	93	13	17	51	3	9	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0004	2223	75	13	8	43	5	6	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0005	2223	5	5	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0006	2223	5	0	1	4	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0007	2223	4	2	2	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0008	2223	2	0	0	2	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0009	2223	2	0	2	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0010	2223	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0011	2223	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0012	2223	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0013	2223	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0014	2223	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0015	2223	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0016	2223	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0017	2223	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	c0018	2223	1	0	0	0	0	1	copy fasta	DTX3L	chr3	122559338	122580203
DTX3_chr12_57599824_57614802	1/1	c0001	1043	397	99	75	164	16	41	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	c0002	1043	19	0	0	18	0	1	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	c0003	1043	1	1	0	0	0	0	copy fasta	DTX3	chr12	57599824	57614802