JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DTX3_chr12_57599824_57614802	0/0	c0004	1043	1	0	1	0	0	0	copy fasta	DTX3	chr12	57599824	57614802
DTX4_chr11_59167132_59213588	1/1	c0001	1860	232	58	34	100	11	27	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0002	1860	104	11	22	52	3	16	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0003	1860	15	0	1	14	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0004	1860	12	11	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0005	1860	6	1	5	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0006	1860	5	0	1	4	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0007	1860	3	3	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0008	1860	2	1	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0009	1860	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0010	1860	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0011	1860	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0012	1860	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0013	1860	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0014	1860	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0015	1860	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0016	1860	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0017	1860	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0018	1860	1	0	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	c0019	1860	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTYMK_chr2_241670747_241691815	1/0	c0001	639	279	59	31	150	10	28	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/1	c0002	639	128	32	32	43	6	14	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	c0003	639	5	0	0	5	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	c0004	639	2	2	0	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	c0005	639	2	2	0	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	c0006	639	1	0	0	1	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	c0007	639	1	1	0	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	c0008	639	1	0	0	1	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	c0009	639	1	0	1	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DUOX1_chr15_45124994_45170574	1/0	c0001	4656	122	12	33	65	1	10	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0002	4656	99	11	5	65	1	17	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0003	4656	48	6	16	7	8	11	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0004	4656	31	6	1	24	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0005	4656	13	11	2	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0006	4656	7	7	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0007	4656	7	6	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0008	4656	6	6	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0009	4656	5	4	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0010	4656	4	4	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0011	4656	3	0	3	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0012	4656	3	0	0	0	0	3	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0013	4656	2	2	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0014	4656	2	2	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0015	4656	2	0	2	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0016	4656	2	0	0	2	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0017	4656	2	2	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0018	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0019	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0020	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0021	4656	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574