JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUOX1_chr15_45124994_45170574	0/0	c0022	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0023	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0024	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0025	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0026	4656	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0027	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0028	4656	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0029	4656	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0030	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0031	4656	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0032	4656	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0033	4656	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0034	4656	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0035	4656	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0036	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0037	4656	1	0	0	0	0	1	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0038	4656	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0039	4656	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0040	4656	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0041	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0042	4656	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0043	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/1	c0044	4656	1	0	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	c0045	4656	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX2_chr15_45087650_45119172	0/1	c0001	4647	107	5	37	35	10	19	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0002	4647	26	23	3	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0003	4647	20	4	0	16	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0004	4647	15	14	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0005	4647	11	3	0	7	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0006	4647	11	2	6	0	1	2	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0007	4647	9	8	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0008	4647	7	6	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0009	4647	5	1	3	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	1/0	c0010	4647	4	3	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0011	4647	3	3	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0012	4647	3	0	3	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0013	4647	3	3	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0014	4647	3	0	0	0	0	3	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0015	4647	3	3	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0016	4647	2	0	0	1	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0017	4647	2	0	0	2	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0018	4647	2	0	1	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0019	4647	2	1	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0020	4647	2	0	0	2	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0021	4647	2	0	0	0	0	2	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0022	4647	2	0	0	0	0	2	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0023	4647	2	2	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0024	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0025	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0026	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172