JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUOX2_chr15_45087650_45119172	0/0	c0027	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0028	4647	1	0	0	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0029	4647	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0030	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0031	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0032	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0033	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0034	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0035	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0036	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0037	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0038	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0039	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0040	4647	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0041	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0042	4647	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0043	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0044	4647	1	0	0	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0045	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0046	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0047	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0048	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0049	4647	1	0	0	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0050	4647	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0051	4647	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0052	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0053	4647	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0054	4647	1	0	0	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0055	4647	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0056	4647	1	0	0	0	1	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	c0057	4647	1	0	0	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOXA1_chr15_45112366_45134879	1/1	c0001	1032	361	78	72	151	18	40	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0002	1032	14	14	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0003	1032	10	0	0	10	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0004	1032	4	4	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0005	1032	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0006	1032	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0007	1032	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0008	1032	1	0	0	0	0	1	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0009	1032	1	0	0	0	0	1	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0010	1032	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	c0011	1032	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA2_chr15_45109326_45123421	0/1	c0001	963	280	36	60	129	14	40	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	1/0	c0002	963	50	46	3	0	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0003	963	18	1	3	13	0	1	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0004	963	10	9	1	0	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0005	963	6	5	1	0	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0006	963	1	1	0	0	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0007	963	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0008	963	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421