JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUOXA2_chr15_45109326_45123421	0/0	c0009	963	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0010	963	1	0	0	0	0	1	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	c0011	963	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUS1L_chr17_82052506_82070804	1/1	c0001	1422	333	59	67	153	13	39	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0002	1422	29	13	5	9	0	2	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0003	1422	27	3	7	8	5	4	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0004	1422	13	7	6	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0005	1419	7	6	1	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0006	1422	5	4	1	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0007	1422	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0008	1422	1	1	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0009	1422	1	1	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0010	1422	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0011	1422	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0012	1422	1	1	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0013	1422	1	0	1	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0014	1422	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0015	1422	1	0	0	0	0	1	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	c0016	1422	1	1	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS2_chr16_68018284_68084320	1/1	c0001	1482	163	65	25	38	8	25	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0002	1482	47	5	10	22	1	9	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0003	1482	5	0	4	0	1	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0004	1482	4	4	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0005	1482	4	4	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0006	1482	3	0	0	3	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0007	1482	3	0	1	2	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0008	1482	1	0	0	0	0	1	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0009	1482	1	1	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0011	1482	1	0	0	0	0	1	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	c0012	1482	1	0	0	1	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS3L_chr19_5780140_5796163	1/1	c0001	1953	170	10	55	71	10	22	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0002	1953	132	31	8	78	2	13	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0003	1953	35	30	3	0	2	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0004	1953	4	4	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0005	1953	4	4	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0006	1953	2	2	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0007	1953	2	2	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0008	1953	2	0	2	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0009	1953	1	0	0	0	0	1	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0010	1953	1	0	0	0	0	1	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0011	1953	1	0	0	1	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0012	1953	1	0	1	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0013	1953	1	0	0	1	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0014	1953	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0015	1953	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0016	1953	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0017	1953	1	0	0	0	0	1	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0018	1953	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0019	1953	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163