JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUS3L_chr19_5780140_5796163	0/0	c0020	1953	1	0	0	1	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	c0021	1953	1	0	1	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS4L_chr7_107558971_107583523	1/1	c0001	954	389	88	76	174	16	33	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	c0002	954	12	0	0	12	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	c0003	954	10	3	2	0	2	3	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	c0004	954	1	1	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUSP10_chr1_221696424_221747089	0/0	c0001	1449	146	68	22	40	6	10	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	c0002	1449	130	7	22	75	4	22	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	1/1	c0003	1449	115	15	19	63	4	12	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	c0004	1449	1	0	0	1	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	c0005	1449	1	0	0	1	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	c0006	1449	1	0	0	1	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	c0007	1449	1	0	1	0	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	c0008	1449	1	0	0	1	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP11_chr2_73757213_73785103	1/1	c0001	993	378	88	71	165	12	40	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	c0002	993	5	4	1	0	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	c0003	993	1	0	0	1	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	c0004	993	1	0	0	1	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	c0005	993	1	0	0	1	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP12_chr1_161744786_161762238	1/1	c0001	1023	208	22	60	82	15	27	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	c0002	1023	172	34	19	105	2	12	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	c0003	1023	60	29	3	26	1	1	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	c0004	1023	2	0	0	2	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	c0005	1023	2	2	0	0	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	c0006	1023	1	1	0	0	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	c0007	1023	1	0	0	1	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP13_chr10_75089436_75104512	0/1	c0001	1004	152	22	36	84	2	7	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	1/0	c0002	1005	98	33	23	13	3	25	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0003	1005	81	13	8	56	0	4	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0004	1005	31	6	5	12	4	4	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0005	1005	22	10	2	7	3	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0006	1004	6	4	2	0	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0007	1004	4	0	0	4	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0008	1005	3	3	0	0	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0009	1005	2	2	0	0	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0010	1005	2	2	0	0	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0011	1005	1	1	0	0	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0012	1004	1	0	0	1	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	c0013	1004	1	0	0	1	0	0	copy fasta	DUSP13	chr10	75089436	75104512
DUSP14_chr17_37484891_37518498	0/1	c0001	597	406	84	74	193	14	40	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	c0002	597	11	0	0	11	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	c0003	597	2	0	0	0	2	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	c0004	597	1	1	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP14_chr17_37484891_37518498	0/0	c0005	597	1	1	0	0	0	0	copy fasta	DUSP14	chr17	37484891	37518498
DUSP15_chr20_31856077_31875527	1/0	c0001	708	137	13	28	73	6	16	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	c0002	708	113	69	33	0	7	4	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	c0003	708	103	2	11	71	4	15	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/1	c0004	708	19	9	2	1	1	5	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	c0005	718	1	0	0	1	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	c0006	708	1	1	0	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527