JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA13_chr7_48166458_48652497	0/0	c0052	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0053	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0054	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0055	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0056	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0057	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0058	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0059	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0060	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0061	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0062	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0063	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0064	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0065	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0066	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0067	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0068	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0069	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0070	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0071	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	1/0	c0072	15177	1	0	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0073	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0074	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0075	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0076	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0077	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0078	15177	1	0	0	0	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0079	15177	1	0	0	0	1	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0080	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0081	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0082	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0083	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0084	15177	1	0	0	0	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0085	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0086	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0087	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0088	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0089	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0090	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0091	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0092	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0093	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0094	15177	1	0	0	0	1	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0095	15177	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0096	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0097	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0098	15177	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0099	15177	1	0	0	0	1	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0100	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	c0101	15177	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497