JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUSP15_chr20_31856077_31875527	0/0	c0007	708	1	1	0	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	c0008	708	1	1	0	0	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	c0009	691	1	0	0	1	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP15_chr20_31856077_31875527	0/0	c0010	708	1	0	0	1	0	0	copy fasta	DUSP15	chr20	31856077	31875527
DUSP16_chr12_12468282_12567863	1/1	c0001	1998	244	49	49	106	11	27	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0002	1989	54	1	6	41	0	6	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0003	1989	33	11	0	19	0	3	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0004	1998	7	0	2	0	2	3	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0005	1998	3	0	0	2	1	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0006	1998	2	2	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0007	1998	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0008	1998	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0009	1989	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0010	1998	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0011	1998	1	0	1	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0012	1998	1	0	0	0	0	1	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0013	1989	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0014	1998	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP16_chr12_12468282_12567863	0/0	c0015	1998	1	1	0	0	0	0	copy fasta	DUSP16	chr12	12468282	12567863
DUSP18_chr22_30656445_30672875	1/1	c0001	567	447	96	84	203	16	46	copy fasta	DUSP18	chr22	30656445	30672875
DUSP18_chr22_30656445_30672875	0/0	c0002	567	1	0	0	1	0	0	copy fasta	DUSP18	chr22	30656445	30672875
DUSP19_chr2_183073747_183105008	1/1	c0001	654	322	82	55	127	16	40	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	c0002	654	2	0	0	2	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	c0003	654	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	c0004	654	1	0	1	0	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	c0005	654	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP19_chr2_183073747_183105008	0/0	c0006	654	1	0	0	1	0	0	copy fasta	DUSP19	chr2	183073747	183105008
DUSP1_chr5_172763096_172776195	0/1	c0001	1104	412	49	81	218	18	45	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	1/0	c0002	1104	49	45	2	0	0	1	copy fasta	DUSP1	chr5	172763096	172776195
DUSP1_chr5_172763096_172776195	0/0	c0003	1104	1	0	1	0	0	0	copy fasta	DUSP1	chr5	172763096	172776195
DUSP21_chrX_44839021_44849888	1/1	c0001	573	220	33	34	116	9	26	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	c0002	573	63	49	9	2	0	3	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	c0003	570	1	0	0	1	0	0	copy fasta	DUSP21	chrX	44839021	44849888
DUSP21_chrX_44839021_44849888	0/0	c0004	573	1	0	0	0	0	1	copy fasta	DUSP21	chrX	44839021	44849888
DUSP22_chr6_287487_356355	1/0	c0001	618	166	27	39	86	6	7	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	c0002	618	50	7	8	30	0	5	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	c0003	618	3	1	2	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP22_chr6_287487_356355	0/0	c0004	618	2	1	1	0	0	0	copy fasta	DUSP22	chr6	287487	356355
DUSP23_chr1_159775962_159787543	1/1	c0001	453	463	97	76	230	15	43	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	c0002	453	13	0	5	2	1	5	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	c0003	453	2	2	0	0	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	c0004	453	1	1	0	0	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	c0005	453	1	0	0	1	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	c0006	453	1	0	1	0	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP23_chr1_159775962_159787543	0/0	c0007	453	1	0	0	1	0	0	copy fasta	DUSP23	chr1	159775962	159787543
DUSP26_chr8_33586330_33605023	1/1	c0001	636	399	84	73	181	15	44	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	c0002	636	8	6	2	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	c0003	636	4	4	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	c0004	636	4	2	1	0	1	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	c0005	636	2	0	2	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023