JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUSP26_chr8_33586330_33605023	0/0	c0006	636	1	1	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	c0007	636	1	1	0	0	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP26_chr8_33586330_33605023	0/0	c0008	636	1	0	0	1	0	0	copy fasta	DUSP26	chr8	33586330	33605023
DUSP28_chr2_240555357_240570256	1/1	c0001	531	398	82	78	172	16	48	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0002	531	10	8	2	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0003	531	4	4	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0004	531	3	0	0	3	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0005	507	2	0	2	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0006	531	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0007	531	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0008	531	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0009	531	1	1	0	0	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP28_chr2_240555357_240570256	0/0	c0010	531	1	0	0	1	0	0	copy fasta	DUSP28	chr2	240555357	240570256
DUSP29_chr10_75032472_75078642	1/1	c0001	663	193	31	40	89	14	17	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0002	663	131	44	15	63	1	8	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0003	663	28	10	5	2	0	11	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0004	663	3	0	2	0	1	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0005	660	3	3	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0006	663	2	2	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0007	663	2	0	2	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0008	663	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0009	663	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0010	663	1	0	0	1	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0011	663	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0012	663	1	1	0	0	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP29_chr10_75032472_75078642	0/0	c0013	663	1	0	0	1	0	0	copy fasta	DUSP29	chr10	75032472	75078642
DUSP2_chr2_96138169_96150440	1/1	c0001	945	410	91	77	184	12	44	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	c0002	945	6	0	0	6	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	c0003	945	2	2	0	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	c0004	945	1	0	1	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	c0005	945	1	0	0	1	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	c0006	945	1	1	0	0	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP2_chr2_96138169_96150440	0/0	c0007	945	1	0	0	1	0	0	copy fasta	DUSP2	chr2	96138169	96150440
DUSP3_chr17_43761125_43783977	1/1	c0001	558	364	90	80	140	12	40	copy fasta	DUSP3	chr17	43761125	43783977
DUSP4_chr8_29328064_29355684	0/0	c0001	1185	237	79	44	90	8	16	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	1/1	c0002	1185	150	19	34	68	4	23	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	c0003	1185	2	2	0	0	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	c0004	1185	1	0	0	0	0	1	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	c0005	1185	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP4_chr8_29328064_29355684	0/0	c0006	1185	1	0	0	1	0	0	copy fasta	DUSP4	chr8	29328064	29355684
DUSP5_chr10_110492907_110516533	0/1	c0001	1155	235	40	44	108	12	30	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0002	1155	130	29	22	75	0	4	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0003	1155	13	1	3	9	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	1/0	c0004	1155	13	10	2	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0005	1155	7	6	1	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0006	1155	2	2	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0007	1155	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0009	1155	1	0	0	0	0	1	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0010	1155	1	0	1	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533