JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUSP5_chr10_110492907_110516533	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0012	1155	1	1	0	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0013	1155	1	0	0	0	0	1	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0014	1155	1	0	1	0	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0015	1155	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP5_chr10_110492907_110516533	0/0	c0016	1155	1	0	0	1	0	0	copy fasta	DUSP5	chr10	110492907	110516533
DUSP6_chr12_89342235_89357501	0/0	c0001	1146	166	27	25	94	4	16	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	1/1	c0002	1146	141	22	26	76	2	13	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	c0003	1146	82	42	23	8	1	8	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	c0004	1146	6	5	1	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	c0005	1146	3	0	1	0	1	1	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	c0006	1146	2	0	0	2	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP6_chr12_89342235_89357501	0/0	c0007	1146	2	0	2	0	0	0	copy fasta	DUSP6	chr12	89342235	89357501
DUSP7_chr3_52043919_52061571	1/1	c0001	1260	367	79	61	185	7	33	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0002	1260	7	4	3	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0003	1260	3	0	0	3	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0004	1260	2	0	2	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0005	1260	1	0	0	1	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0006	1260	1	0	0	0	0	1	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0007	1260	1	0	0	1	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0008	1260	1	0	0	0	1	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP7_chr3_52043919_52061571	0/0	c0009	1260	1	1	0	0	0	0	copy fasta	DUSP7	chr3	52043919	52061571
DUSP8_chr11_1549051_1577271	0/1	c0001	1878	166	41	26	73	8	17	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0002	1878	165	33	34	74	6	18	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0003	1878	4	3	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0004	1878	3	1	2	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0005	1878	2	0	0	2	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0006	1878	2	0	2	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0007	1878	2	1	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0008	1878	2	0	0	0	0	2	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0009	1878	2	1	0	0	0	1	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0010	1878	2	2	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0011	1878	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0012	1878	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0013	1878	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0014	1878	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0015	1878	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0016	1878	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0017	1878	1	0	0	0	1	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0018	1878	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0019	1866	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0020	1878	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0021	1878	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0022	1878	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0023	1878	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0024	1878	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0025	1893	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0026	1878	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	c0027	1878	1	0	0	0	1	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP9_chrX_153642203_153656326	1/1	c0001	1155	310	67	60	142	9	30	copy fasta	DUSP9	chrX	153642203	153656326