JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DUSP9_chrX_153642203_153656326	0/0	c0002	1155	6	5	1	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	c0003	1155	3	3	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	c0004	1156	2	0	0	0	0	2	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	c0005	1155	2	2	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	c0006	1155	2	0	2	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	c0007	1155	1	1	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	c0008	1156	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	c0009	1159	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUT_chr15_48326429_48348373	1/1	c0001	759	367	88	48	178	10	41	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	c0002	759	13	3	9	1	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	c0003	759	4	0	0	4	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	c0004	759	1	0	0	1	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	c0005	759	1	0	0	0	0	1	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	c0006	759	1	1	0	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	c0007	759	1	0	1	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUXA_chr19_57149021_57172485	1/1	c0001	615	441	96	81	200	16	46	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	c0002	615	1	1	0	0	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	c0003	615	1	0	1	0	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	c0004	615	1	0	0	1	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	c0005	615	1	1	0	0	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	c0006	615	1	0	0	1	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXB_chr16_75688893_75706461	1/1	c0001	1038	244	69	46	88	11	28	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	c0002	1038	154	4	28	108	0	14	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	c0003	1038	10	5	2	2	1	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	c0004	1038	7	5	2	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	c0005	1038	4	4	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	c0006	1038	1	1	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	c0007	1038	1	1	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	c0008	1038	1	1	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DVL1_chr1_1330278_1354418	0/1	c0001	2088	294	56	57	121	15	44	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0002	2088	20	19	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0003	2088	6	5	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	1/0	c0004	2088	2	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0005	2088	2	2	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0006	2088	2	0	0	2	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0007	2088	2	2	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0008	2088	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0009	2077	1	0	0	0	1	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0010	2088	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0011	2088	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0012	2088	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0013	2088	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0014	2088	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0015	2088	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0016	2088	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0017	2088	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0018	2088	1	0	0	0	0	1	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0019	2088	1	0	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0020	2088	1	0	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0021	2088	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418