JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DVL1_chr1_1330278_1354418	0/0	c0022	2088	1	0	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	c0023	2088	1	0	0	0	0	1	copy fasta	DVL1	chr1	1330278	1354418
DVL2_chr17_7220342_7239517	0/0	c0001	2211	137	20	21	73	6	17	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	1/1	c0002	2211	108	12	24	54	5	11	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0003	2211	74	37	3	34	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0004	2211	46	6	15	13	1	11	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0005	2211	10	7	2	0	0	1	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0006	2211	4	0	1	0	3	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0007	2211	3	3	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0008	2211	3	0	0	3	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0009	2211	2	1	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0010	2211	2	2	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0011	2211	2	0	0	2	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0012	2211	2	0	1	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0013	2211	2	0	0	2	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0014	2211	2	0	0	2	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0015	2211	1	0	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0016	2211	1	1	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0017	2211	1	0	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0018	2211	1	1	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0019	2211	1	0	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0020	2211	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0021	2211	1	0	0	0	1	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0022	2211	1	0	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	c0023	2211	1	0	0	1	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL3_chr3_184150377_184178614	1/1	c0001	2151	381	89	74	161	15	40	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0002	2136	6	0	0	6	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0003	2151	2	0	0	0	0	2	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0004	2151	2	2	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0005	2151	1	0	0	0	1	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0006	2151	1	0	0	0	0	1	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0007	2151	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0008	2151	1	0	1	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0009	2151	1	0	0	1	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0010	2151	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0011	2151	1	0	1	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0012	2151	1	1	0	0	0	0	copy fasta	DVL3	chr3	184150377	184178614
DVL3_chr3_184150377_184178614	0/0	c0013	2151	1	0	0	0	0	1	copy fasta	DVL3	chr3	184150377	184178614
DXO_chr6_31964815_31977138	0/1	c0001	1191	375	76	65	189	13	31	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0002	1191	28	11	1	4	2	10	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0003	1191	16	1	4	9	1	1	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0004	1191	4	0	3	0	1	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0005	1191	3	3	0	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0006	1191	1	1	0	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0007	1191	1	0	0	1	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0009	1191	1	0	1	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0010	1191	1	1	0	0	0	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0011	1191	1	0	0	0	1	0	copy fasta	DXO	chr6	31964815	31977138
DXO_chr6_31964815_31977138	0/0	c0012	1191	1	0	0	1	0	0	copy fasta	DXO	chr6	31964815	31977138