JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYDC1_chr10_80331105_80361755	1/1	c0001	534	364	87	77	144	10	44	copy fasta	DYDC1	chr10	80331105	80361755
DYDC1_chr10_80331105_80361755	0/0	c0002	477	1	0	1	0	0	0	copy fasta	DYDC1	chr10	80331105	80361755
DYDC1_chr10_80331105_80361755	0/0	c0003	534	1	1	0	0	0	0	copy fasta	DYDC1	chr10	80331105	80361755
DYDC2_chr10_80351781_80373073	1/1	c0001	534	328	80	59	147	9	31	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	c0002	534	40	3	16	4	2	15	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	c0003	534	5	0	0	5	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	c0004	534	4	4	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	c0005	534	4	0	3	0	1	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	c0006	534	4	4	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	c0007	534	2	0	0	2	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYDC2_chr10_80351781_80373073	0/0	c0008	534	1	1	0	0	0	0	copy fasta	DYDC2	chr10	80351781	80373073
DYM_chr18_49031387_49465645	1/1	c0001	2175	261	48	55	117	14	25	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0002	2175	13	12	1	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0003	2175	9	4	0	1	0	4	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0004	2175	1	0	0	1	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0005	2175	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0006	2175	1	0	1	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0007	2175	1	0	1	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0008	2175	1	0	0	0	0	1	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0009	2175	1	0	0	1	0	0	copy fasta	DYM	chr18	49031387	49465645
DYM_chr18_49031387_49465645	0/0	c0010	2175	1	1	0	0	0	0	copy fasta	DYM	chr18	49031387	49465645
DYNAP_chr18_54586245_54604493	0/0	c0001	555	175	43	36	71	5	20	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	1/1	c0002	555	132	31	30	52	6	11	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	c0003	555	43	18	8	7	3	7	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	c0004	555	3	3	0	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	c0005	555	2	1	1	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	c0006	555	1	0	0	1	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	c0007	555	1	0	0	1	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNAP_chr18_54586245_54604493	0/0	c0008	555	1	0	1	0	0	0	copy fasta	DYNAP	chr18	54586245	54604493
DYNC1H1_chr14_101959573_102061443	0/0	c0001	13941	67	11	8	44	0	4	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0002	13941	61	5	11	43	0	2	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	1/1	c0003	13941	40	10	8	8	5	7	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0004	13941	17	11	3	0	0	3	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0005	13941	14	13	0	0	1	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0006	13941	11	0	1	10	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0007	13941	8	5	3	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0008	13941	8	8	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0009	13941	8	3	1	1	0	3	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0010	13941	5	5	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0011	13941	5	1	3	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0012	13941	4	0	0	4	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0013	13941	3	0	0	3	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0014	13941	2	2	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0015	13941	2	2	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0016	13941	2	2	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0017	13941	2	1	1	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0018	13941	2	0	2	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0019	13941	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0020	13941	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0021	13941	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443