JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYNC1H1_chr14_101959573_102061443	0/0	c0022	13941	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0023	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0024	13941	1	0	1	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0025	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0026	13941	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0027	13941	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0028	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0029	13941	1	0	0	0	0	1	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0030	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0031	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0032	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0033	13941	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0034	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0035	13941	1	0	0	1	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0036	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1H1_chr14_101959573_102061443	0/0	c0037	13941	1	1	0	0	0	0	copy fasta	DYNC1H1	chr14	101959573	102061443
DYNC1I1_chr7_95767554_96103424	1/1	c0001	1887	144	43	23	54	5	17	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0002	1887	38	18	8	11	1	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0003	1887	27	8	9	5	0	5	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0004	1887	10	6	0	4	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0005	1887	3	3	0	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0006	1887	2	1	1	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0007	1887	2	2	0	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0008	1887	1	1	0	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0009	1887	1	0	1	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0010	1887	1	1	0	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I1_chr7_95767554_96103424	0/0	c0011	1887	1	1	0	0	0	0	copy fasta	DYNC1I1	chr7	95767554	96103424
DYNC1I2_chr2_171682469_171755158	1/1	c0001	1917	331	67	61	153	8	40	copy fasta	DYNC1I2	chr2	171682469	171755158
DYNC1I2_chr2_171682469_171755158	0/0	c0002	1917	1	1	0	0	0	0	copy fasta	DYNC1I2	chr2	171682469	171755158
DYNC1I2_chr2_171682469_171755158	0/0	c0003	1917	1	0	0	1	0	0	copy fasta	DYNC1I2	chr2	171682469	171755158
DYNC1I2_chr2_171682469_171755158	0/0	c0004	1917	1	0	1	0	0	0	copy fasta	DYNC1I2	chr2	171682469	171755158
DYNC1LI1_chr3_32520974_32575858	1/1	c0001	1572	291	61	57	132	13	26	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0002	1572	28	8	6	13	1	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0003	1572	4	3	1	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0004	1572	4	3	1	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0005	1572	1	1	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0006	1572	1	1	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0007	1572	1	0	0	0	0	1	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0008	1572	1	0	1	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0009	1572	1	0	0	1	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0010	1572	1	0	0	0	0	1	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0011	1572	1	0	0	1	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI1_chr3_32520974_32575858	0/0	c0013	1572	1	0	0	1	0	0	copy fasta	DYNC1LI1	chr3	32520974	32575858
DYNC1LI2_chr16_66715893_66756609	1/1	c0001	1479	324	86	44	139	12	41	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	c0002	1479	9	1	7	0	0	1	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	c0003	1479	1	0	1	0	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	c0004	1479	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	c0005	1479	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609
DYNC1LI2_chr16_66715893_66756609	0/0	c0006	1479	1	0	0	1	0	0	copy fasta	DYNC1LI2	chr16	66715893	66756609