JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYNC2H1_chr11_103104426_103484863	0/0	c0048	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0049	12924	1	0	0	1	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0050	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0051	12924	1	0	0	1	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0052	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0053	12924	1	0	0	1	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0054	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0055	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0056	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0057	12924	1	0	0	0	0	1	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0058	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0059	12924	1	0	0	0	0	1	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0060	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0061	12924	1	0	0	0	0	1	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0062	12924	1	0	0	1	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0063	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0064	12924	1	0	1	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0065	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0066	12924	1	1	0	0	0	0	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2H1_chr11_103104426_103484863	0/0	c0067	12924	1	0	0	0	0	1	copy fasta	DYNC2H1	chr11	103104426	103484863
DYNC2I1_chr7_158851558_158951189	0/0	c0001	3201	117	15	20	70	1	11	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/1	c0002	3201	96	15	23	43	3	11	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0003	3198	24	1	7	8	2	6	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0004	3201	6	6	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0005	3201	2	1	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0006	3201	2	2	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0007	3201	2	1	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0008	3201	2	2	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0009	3198	2	2	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0010	3198	2	0	0	0	2	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0011	3201	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0012	3201	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0013	3201	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	1/0	c0014	3201	1	0	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0015	3201	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0016	3201	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0017	3201	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0018	3201	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0019	3201	1	0	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0020	3201	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0021	3201	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0022	3201	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0023	3201	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0024	3201	1	0	0	0	1	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0025	3201	1	0	0	0	1	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0026	3201	1	0	0	1	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0027	3198	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0028	3198	1	1	0	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I1_chr7_158851558_158951189	0/0	c0029	3198	1	0	1	0	0	0	copy fasta	DYNC2I1	chr7	158851558	158951189
DYNC2I2_chr9_128628653_128661847	0/0	c0001	1611	162	28	35	70	7	22	copy fasta	DYNC2I2	chr9	128628653	128661847