JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYNC2I2_chr9_128628653_128661847	0/0	c0002	1611	122	26	15	67	2	12	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0003	1611	43	23	4	14	0	2	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0004	1611	10	0	0	10	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0005	1611	7	7	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/1	c0006	1611	6	2	0	3	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0007	1611	5	5	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0008	1611	3	0	0	3	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0009	1611	2	0	0	2	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	1/0	c0010	1611	2	1	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0011	1611	1	0	0	1	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0012	1611	1	0	0	0	1	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0013	1611	1	1	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0014	1611	1	1	0	0	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0015	1611	1	0	0	1	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2I2_chr9_128628653_128661847	0/0	c0016	1611	1	0	0	1	0	0	copy fasta	DYNC2I2	chr9	128628653	128661847
DYNC2LI1_chr2_43769039_43815010	1/1	c0001	1056	104	10	32	37	7	16	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0002	1056	100	45	20	27	1	7	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0003	1056	72	30	16	6	6	14	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0004	1056	6	6	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0005	1056	3	3	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0006	1056	2	1	1	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0007	1056	1	0	0	0	0	1	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0009	1056	1	0	0	1	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0010	1056	1	1	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0011	1056	1	1	0	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0012	1056	1	0	1	0	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNC2LI1_chr2_43769039_43815010	0/0	c0013	1056	1	0	0	1	0	0	copy fasta	DYNC2LI1	chr2	43769039	43815010
DYNLL1_chr12_120491113_120503493	1/1	c0001	270	405	93	68	184	14	44	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	c0002	270	1	0	0	1	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	c0003	270	1	0	0	1	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL1_chr12_120491113_120503493	0/0	c0004	270	1	1	0	0	0	0	copy fasta	DYNLL1	chr12	120491113	120503493
DYNLL2_chr17_58078419_58100542	1/1	c0001	270	306	90	62	98	18	36	copy fasta	DYNLL2	chr17	58078419	58100542
DYNLRB1_chr20_34511422_34545958	1/1	c0001	291	380	78	65	171	14	50	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB1_chr20_34511422_34545958	0/0	c0002	291	2	2	0	0	0	0	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB1_chr20_34511422_34545958	0/0	c0003	291	1	0	1	0	0	0	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB1_chr20_34511422_34545958	0/0	c0004	291	1	0	0	1	0	0	copy fasta	DYNLRB1	chr20	34511422	34545958
DYNLRB2_chr16_80535993_80555811	1/1	c0001	291	361	59	64	186	11	39	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	c0002	291	50	29	13	2	5	1	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	c0003	291	2	2	0	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	c0004	291	1	0	0	1	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	c0005	291	1	0	1	0	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLRB2_chr16_80535993_80555811	0/0	c0006	291	1	0	0	1	0	0	copy fasta	DYNLRB2	chr16	80535993	80555811
DYNLT1_chr6_158631474_158649743	1/1	c0001	342	388	91	74	163	15	43	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	c0002	342	5	5	0	0	0	0	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	c0003	342	2	0	0	0	1	1	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT1_chr6_158631474_158649743	0/0	c0004	342	1	0	0	1	0	0	copy fasta	DYNLT1	chr6	158631474	158649743
DYNLT2B_chr3_196286219_196323240	1/1	c0001	429	328	94	63	111	16	42	copy fasta	DYNLT2B	chr3	196286219	196323240
DYNLT2B_chr3_196286219_196323240	0/0	c0002	429	1	0	1	0	0	0	copy fasta	DYNLT2B	chr3	196286219	196323240
DYNLT2B_chr3_196286219_196323240	0/0	c0003	429	1	0	0	1	0	0	copy fasta	DYNLT2B	chr3	196286219	196323240