Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
ADGRD2_chr9_124445451_124483580	0/0	c0050	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0051	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0052	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0053	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0054	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0055	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0056	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0057	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0058	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0059	2949	1	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0060	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0061	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0062	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0063	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0064	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0065	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0066	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0067	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0068	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0069	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0070	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0071	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0072	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0073	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0074	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0075	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0076	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0077	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0078	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0079	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0080	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0081	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0082	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0083	2949	1	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0084	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0085	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0086	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0087	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0088	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0089	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0090	2949	1	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0091	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0092	2949	1	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0093	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0094	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0095	2949	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0096	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0097	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0098	2949	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0099	2949	1	0	0	1	0	copy fasta	ADGRD2	chr9	124445451	124483580