JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYNLT2_chr6_169735109_169756572	0/0	c0001	597	297	60	55	139	15	28	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	c0002	597	64	30	5	20	0	9	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/1	c0003	597	56	8	12	32	1	2	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	c0004	597	1	0	0	1	0	0	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT2_chr6_169735109_169756572	0/0	c0005	597	1	0	0	0	0	1	copy fasta	DYNLT2	chr6	169735109	169756572
DYNLT3_chrX_37833836_37852571	1/1	c0001	351	210	22	48	108	9	21	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	c0002	351	111	54	7	40	2	8	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	c0003	351	1	0	0	0	0	1	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	c0004	350	1	0	0	1	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT3_chrX_37833836_37852571	0/0	c0005	350	1	0	0	1	0	0	copy fasta	DYNLT3	chrX	37833836	37852571
DYNLT4_chr1_44800893_44812351	1/0	c0001	666	241	76	42	88	5	29	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/1	c0002	666	84	8	12	49	4	10	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0003	666	57	5	9	32	5	6	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0004	666	3	0	0	3	0	0	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0005	666	2	0	0	0	1	1	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0006	666	1	0	0	1	0	0	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0007	666	1	0	0	0	1	0	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0008	666	1	0	0	1	0	0	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0009	666	1	0	1	0	0	0	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT4_chr1_44800893_44812351	0/0	c0010	666	1	1	0	0	0	0	copy fasta	DYNLT4	chr1	44800893	44812351
DYNLT5_chr1_66747459_66784047	1/0	c0001	540	269	67	56	116	6	23	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/1	c0002	540	75	16	20	22	7	9	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	c0003	540	56	9	2	32	3	10	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	c0004	540	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYNLT5_chr1_66747459_66784047	0/0	c0005	540	1	0	0	0	0	1	copy fasta	DYNLT5	chr1	66747459	66784047
DYRK1A_chr21_37361773_37531358	1/1	c0001	2265	343	86	60	133	18	44	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	c0002	2265	4	1	3	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	c0003	2265	1	1	0	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	c0004	2265	1	0	1	0	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1A_chr21_37361773_37531358	0/0	c0005	2265	1	0	0	1	0	0	copy fasta	DYRK1A	chr21	37361773	37531358
DYRK1B_chr19_39820350_39839162	1/1	c0001	1890	363	88	79	143	15	36	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	c0002	1890	2	2	0	0	0	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	c0003	1890	2	2	0	0	0	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	c0004	1890	1	0	0	1	0	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	c0005	1890	1	0	0	0	0	1	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	c0006	1890	1	0	1	0	0	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	c0007	1890	1	0	0	0	0	1	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK1B_chr19_39820350_39839162	0/0	c0008	1890	1	0	0	0	1	0	copy fasta	DYRK1B	chr19	39820350	39839162
DYRK2_chr12_67643745_67670406	0/1	c0001	1806	214	23	45	122	6	17	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	1/0	c0002	1806	138	34	20	58	8	17	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0003	1806	29	27	2	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0004	1806	3	1	2	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0005	1806	1	1	0	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0006	1806	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0007	1806	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0008	1806	1	0	1	0	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0009	1806	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK2_chr12_67643745_67670406	0/0	c0010	1806	1	0	0	1	0	0	copy fasta	DYRK2	chr12	67643745	67670406
DYRK3_chr1_206630536_206660158	1/1	c0001	1767	381	82	73	170	18	36	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0002	1767	3	3	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158