JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYRK3_chr1_206630536_206660158	0/0	c0003	1767	2	2	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0004	1767	2	0	1	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0005	1767	1	0	0	0	0	1	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0006	1767	1	0	0	0	0	1	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0007	1767	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0008	1767	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0009	1767	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0010	1767	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0011	1767	1	1	0	0	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK3_chr1_206630536_206660158	0/0	c0012	1767	1	0	0	1	0	0	copy fasta	DYRK3	chr1	206630536	206660158
DYRK4_chr12_4557208_4618875	1/0	c0001	1905	100	22	21	42	4	10	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0002	1905	59	5	9	35	3	7	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0003	1905	52	4	2	42	0	4	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0004	1905	31	2	6	20	2	1	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0005	1905	30	1	10	14	2	3	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0006	1905	23	0	2	16	0	5	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0007	1905	22	4	0	15	0	3	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0008	1905	21	8	1	8	0	4	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0009	1905	10	8	1	0	1	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0010	1905	8	2	0	4	1	1	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0011	1905	7	7	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0012	1905	6	3	1	1	0	1	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0013	1905	5	2	1	2	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0014	1905	5	4	0	1	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0015	1905	3	1	2	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/1	c0016	1905	3	1	0	0	1	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0017	1905	3	2	1	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0018	1905	2	2	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0019	1905	2	2	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0020	1905	2	2	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0021	1905	2	1	1	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0022	1905	2	2	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0023	1905	2	0	0	2	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0024	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0025	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0026	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0027	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0028	1905	1	0	1	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0029	1905	1	0	1	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0030	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0031	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0032	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0033	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0034	1905	1	0	0	1	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0035	1905	1	0	0	0	0	1	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0036	1905	1	1	0	0	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYRK4_chr12_4557208_4618875	0/0	c0037	1905	1	0	0	1	0	0	copy fasta	DYRK4	chr12	4557208	4618875
DYSF_chr2_71448561_71691763	0/0	c0001	6243	28	7	5	15	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	1/0	c0002	6243	26	0	4	15	0	6	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/1	c0003	6243	15	1	8	4	1	0	copy fasta	DYSF	chr2	71448561	71691763