JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYSF_chr2_71448561_71691763	0/0	c0004	6243	7	7	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0005	6243	6	0	1	0	0	5	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0006	6243	5	1	0	4	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0007	6243	5	5	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0008	6243	3	2	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0009	6243	3	3	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0010	6243	3	3	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0011	6243	2	1	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0012	6243	2	0	2	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0013	6243	2	0	2	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0014	6243	2	0	1	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0015	6243	2	2	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0016	6243	2	2	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0017	6243	2	0	0	1	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0018	6243	2	1	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0019	6243	2	1	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0020	6243	2	0	0	2	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0021	6243	2	2	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0022	6243	2	2	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0023	6243	2	2	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0024	6243	2	0	2	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0025	6243	2	0	2	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0026	6243	2	1	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0027	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0028	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0029	6243	1	0	0	0	1	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0030	6243	1	0	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0031	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0032	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0033	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0034	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0035	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0036	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0037	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0038	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0039	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0040	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0041	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0042	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0043	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0044	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0045	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0046	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0047	6243	1	0	0	0	1	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0048	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0049	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0050	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0051	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0052	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0053	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763