JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYSF_chr2_71448561_71691763	0/0	c0054	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0055	6243	1	0	0	0	1	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0056	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0057	6243	1	0	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0058	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0059	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0060	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0061	6243	1	0	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0062	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0063	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0064	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0065	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0066	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0067	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0068	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0069	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0070	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0071	6243	1	0	0	1	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0072	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0073	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0074	6243	1	0	0	0	1	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0075	6243	1	0	0	0	1	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0076	6243	1	0	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0077	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0078	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0079	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0080	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0081	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0082	6243	1	0	1	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0083	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0084	6243	1	1	0	0	0	0	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71448561_71691763	0/0	c0085	6243	1	0	0	0	0	1	copy fasta	DYSF	chr2	71448561	71691763
DYSF_chr2_71461699_71691763	0/0	c0001	6360	28	7	6	14	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	1/0	c0002	6360	27	0	5	15	0	6	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/1	c0003	6360	17	1	9	5	1	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0004	6360	8	8	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0005	6360	7	0	2	0	0	5	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0006	6360	5	1	0	4	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0007	6360	5	5	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0008	6360	4	1	0	3	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0009	6360	4	0	3	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0010	6360	4	3	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0011	6360	3	2	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0012	6360	3	3	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0013	6360	2	0	1	1	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0014	6360	2	0	1	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0015	6360	2	2	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0016	6360	2	2	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0017	6360	2	0	0	2	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0018	6360	2	0	0	1	0	1	copy fasta	DYSF	chr2	71461699	71691763