JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DYSF_chr2_71461699_71691763	0/0	c0069	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0070	6360	1	0	0	1	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0071	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0072	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0073	6360	1	0	0	1	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0074	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0075	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0076	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0077	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0078	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0079	6360	1	0	0	0	1	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0080	6360	1	0	0	0	1	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0081	6360	1	0	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0082	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0083	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0084	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0085	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0086	6360	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0087	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0088	6360	1	0	1	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0089	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0090	6360	1	1	0	0	0	0	copy fasta	DYSF	chr2	71461699	71691763
DYSF_chr2_71461699_71691763	0/0	c0091	6360	1	0	0	0	0	1	copy fasta	DYSF	chr2	71461699	71691763
DYTN_chr2_206646621_206723396	1/0	c0001	1737	218	22	34	128	10	23	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/1	c0002	1737	91	31	17	29	2	11	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0003	1737	20	20	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0004	1737	15	0	12	0	2	1	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0005	1737	10	3	3	1	2	1	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0006	1737	3	2	0	0	0	1	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0007	1737	3	0	3	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0008	1737	3	3	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0009	1737	2	2	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0010	1737	2	1	1	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0011	1737	2	2	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0012	1737	2	2	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0013	1737	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0014	1737	1	0	1	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0015	1737	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0016	1737	1	0	0	1	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0017	1737	1	0	0	0	0	1	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0018	1737	1	0	0	1	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0019	1737	1	0	0	1	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0020	1737	1	0	0	1	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0021	1737	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0022	1737	1	1	0	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DYTN_chr2_206646621_206723396	0/0	c0023	1737	1	0	1	0	0	0	copy fasta	DYTN	chr2	206646621	206723396
DZANK1_chr20_18378367_18472030	0/1	c0001	2334	71	25	15	19	1	10	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0002	2334	52	14	12	22	1	3	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0003	2334	51	0	6	34	5	6	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0004	2334	46	5	6	27	5	3	copy fasta	DZANK1	chr20	18378367	18472030