JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DZANK1_chr20_18378367_18472030	0/0	c0005	2334	37	4	14	9	3	7	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0006	2334	27	0	3	24	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0007	2334	20	13	3	0	0	4	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0008	2334	10	0	4	5	0	1	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0009	2334	7	1	0	5	0	1	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0010	2334	6	2	2	2	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0011	2334	5	0	2	3	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0012	2334	5	5	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0013	2334	4	4	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0014	2334	4	4	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0015	2334	4	3	1	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0016	2334	2	0	1	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0017	2334	2	0	0	1	0	1	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0018	2334	2	0	0	2	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0019	2334	2	0	1	0	1	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0020	2334	2	2	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0021	2334	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0022	2334	1	0	1	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0023	2334	1	0	1	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0024	2334	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0025	2334	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0026	2334	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0027	2334	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0028	2334	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0029	2334	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0030	2334	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0031	2334	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0032	2334	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0033	2334	1	0	0	1	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	1/0	c0034	2334	1	0	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZANK1_chr20_18378367_18472030	0/0	c0035	2334	1	1	0	0	0	0	copy fasta	DZANK1	chr20	18378367	18472030
DZIP1L_chr3_138056990_138120608	1/1	c0001	2304	115	21	12	63	4	13	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0002	2304	110	12	20	61	4	13	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0003	2304	28	24	4	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0004	2304	18	15	3	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0005	2304	12	2	5	1	2	2	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0006	2304	7	7	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0007	2304	3	0	0	2	0	1	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0008	2304	2	0	0	0	0	2	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0009	2304	2	0	0	2	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0010	2304	2	0	0	0	0	2	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0011	2304	2	2	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0012	2304	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0013	2304	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0014	2304	1	1	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0015	2304	1	1	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0016	2304	1	0	0	0	0	1	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0017	2304	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0018	2304	1	0	0	1	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0019	2304	1	0	0	1	0	0	copy fasta	DZIP1L	chr3	138056990	138120608