JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DZIP1L_chr3_138056990_138120608	0/0	c0020	2304	1	1	0	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0021	2304	1	0	0	1	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1L_chr3_138056990_138120608	0/0	c0022	2304	1	0	1	0	0	0	copy fasta	DZIP1L	chr3	138056990	138120608
DZIP1_chr13_95573202_95649706	1/1	c0001	2604	221	40	40	112	7	20	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0002	2604	80	27	9	27	6	11	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0003	2604	58	5	9	40	2	2	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0004	2604	6	6	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0005	2604	4	4	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0006	2604	2	2	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0007	2604	2	2	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0008	2604	1	0	0	0	1	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0009	2604	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0010	2604	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0011	2604	1	0	0	0	0	1	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0012	2604	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0013	2604	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0014	2604	1	1	0	0	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0015	2604	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP1_chr13_95573202_95649706	0/0	c0016	2604	1	0	0	1	0	0	copy fasta	DZIP1	chr13	95573202	95649706
DZIP3_chr3_108584722_108699840	0/0	c0001	3627	235	54	47	107	7	20	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/1	c0002	3627	50	13	12	4	3	17	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0003	3627	8	7	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0004	3627	6	5	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0005	3627	4	3	1	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0006	3627	4	4	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	1/0	c0007	3627	2	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0008	3627	2	2	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0009	3627	1	0	0	1	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0010	3627	1	0	0	0	0	1	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0011	3627	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0012	3627	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0013	3627	1	0	0	0	0	1	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0014	3627	1	1	0	0	0	0	copy fasta	DZIP3	chr3	108584722	108699840
DZIP3_chr3_108584722_108699840	0/0	c0015	3627	1	0	0	0	0	1	copy fasta	DZIP3	chr3	108584722	108699840
E2F1_chr20_33670477_33691385	1/1	c0001	1314	350	78	64	150	16	40	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0002	1314	6	6	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0003	1314	4	1	0	0	2	1	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0004	1314	3	0	0	3	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0005	1314	3	2	1	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0006	1314	3	0	0	3	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0007	1314	2	0	0	0	0	2	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0008	1314	2	2	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0009	1314	1	0	0	1	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0010	1314	1	0	0	0	0	1	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0011	1314	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0012	1314	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0013	1314	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0014	1314	1	0	1	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0015	1314	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F1_chr20_33670477_33691385	0/0	c0016	1314	1	0	0	1	0	0	copy fasta	E2F1	chr20	33670477	33691385