JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
E2F1_chr20_33670477_33691385	0/0	c0017	1314	1	1	0	0	0	0	copy fasta	E2F1	chr20	33670477	33691385
E2F2_chr1_23501438_23536233	1/1	c0001	1314	242	90	50	66	9	25	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	c0002	1314	145	2	25	104	3	11	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	c0003	1314	3	3	0	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	c0004	1314	2	0	1	0	0	1	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	c0005	1314	2	1	1	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	c0006	1314	1	0	0	0	0	1	copy fasta	E2F2	chr1	23501438	23536233
E2F2_chr1_23501438_23536233	0/0	c0007	1314	1	0	1	0	0	0	copy fasta	E2F2	chr1	23501438	23536233
E2F3_chr6_20396879_20498714	1/1	c0001	1398	321	89	54	126	11	39	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	c0002	1389	4	3	1	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	c0003	1398	3	3	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	c0004	1398	3	3	0	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	c0005	1398	2	0	0	1	0	1	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	c0006	1398	1	0	0	0	1	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	c0007	1398	1	0	0	1	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F3_chr6_20396879_20498714	0/0	c0008	1398	1	0	1	0	0	0	copy fasta	E2F3	chr6	20396879	20498714
E2F4_chr16_67187155_67203918	1/1	c0001	1242	268	59	57	105	11	34	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0002	1242	17	13	1	0	0	3	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0003	1251	8	7	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0004	1245	7	2	3	2	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0005	1233	4	4	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0006	1254	4	3	0	0	0	1	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0007	1236	3	1	1	0	1	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0008	1248	3	3	0	0	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0009	1242	2	0	0	2	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0010	1242	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0011	1242	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0012	1242	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F4_chr16_67187155_67203918	0/0	c0013	1242	1	0	0	1	0	0	copy fasta	E2F4	chr16	67187155	67203918
E2F5_chr8_85172154_85219518	0/1	c0001	1041	171	42	31	68	8	21	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	1/0	c0002	1041	149	34	20	75	3	16	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	c0003	1041	12	5	5	0	1	1	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	c0004	1041	1	1	0	0	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	c0005	1041	1	1	0	0	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	c0006	1041	1	0	0	1	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F5_chr8_85172154_85219518	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	E2F5	chr8	85172154	85219518
E2F6_chr2_11439375_11471161	1/1	c0001	846	366	88	74	156	10	36	copy fasta	E2F6	chr2	11439375	11471161
E2F7_chr12_77016251_77070569	0/0	c0001	2736	250	37	47	132	5	29	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0002	2736	60	7	19	28	2	4	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	1/0	c0003	2736	29	25	0	0	0	3	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0004	2736	11	9	1	0	1	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0005	2736	10	1	6	0	1	2	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0006	2736	6	2	4	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0007	2736	5	0	0	5	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0008	2736	4	4	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0009	2736	2	2	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0010	2736	2	0	0	2	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0011	2736	2	0	0	0	1	1	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0012	2736	1	0	0	1	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0013	2736	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569