JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
E2F7_chr12_77016251_77070569	0/0	c0014	2736	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0015	2736	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0016	2736	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0017	2736	1	0	0	1	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0018	2736	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0019	2736	1	0	0	0	0	1	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0020	2736	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0021	2736	1	0	1	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0022	2736	1	0	0	1	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/1	c0023	2736	1	0	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F7_chr12_77016251_77070569	0/0	c0024	2736	1	1	0	0	0	0	copy fasta	E2F7	chr12	77016251	77070569
E2F8_chr11_19219063_19245945	1/1	c0001	2604	308	38	66	154	14	34	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0002	2604	44	19	3	16	2	4	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0003	2604	43	20	4	15	1	3	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0004	2604	5	0	0	5	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0005	2604	5	0	0	5	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0006	2604	5	5	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0007	2604	3	3	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0008	2604	3	0	0	3	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0009	2604	2	2	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0010	2604	2	2	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0011	2604	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0012	2604	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0013	2604	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0014	2604	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0015	2604	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0016	2604	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0017	2604	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0018	2604	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0019	2604	1	0	0	0	1	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0020	2604	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0021	2604	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0022	2604	1	0	1	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0023	2604	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0024	2604	1	0	0	1	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0025	2604	1	0	0	0	0	1	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0026	2604	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0027	2604	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E2F8_chr11_19219063_19245945	0/0	c0028	2604	1	1	0	0	0	0	copy fasta	E2F8	chr11	19219063	19245945
E4F1_chr16_2218591_2240742	0/0	c0001	2355	217	74	36	81	4	22	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/1	c0002	2355	129	7	34	60	10	17	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0003	2355	13	0	1	6	2	4	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0004	2355	11	10	1	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0005	2355	3	0	0	3	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0006	2355	2	2	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0007	2355	2	0	0	0	0	2	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0008	2355	2	0	0	2	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0009	2355	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0010	2258	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0011	2355	1	0	1	0	0	0	copy fasta	E4F1	chr16	2218591	2240742