JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRD2_chr9_124445451_124483580	0/0	c0100	2949	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0101	2949	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0102	2949	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	c0103	2949	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRE1_chr19_6882579_6945450	0/1	c0001	2661	57	1	17	27	3	8	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0002	2661	42	1	6	28	0	7	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0003	2661	41	7	7	16	1	10	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0004	2661	26	11	9	0	1	5	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0005	2661	19	0	0	18	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0006	2661	13	11	2	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0007	2661	10	7	0	0	3	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0008	2661	8	0	8	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0009	2661	8	3	0	3	0	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0010	2661	7	0	2	2	1	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0011	2661	7	7	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0012	2661	7	2	4	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	1/0	c0013	2661	6	0	0	2	1	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0014	2661	5	5	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0015	2661	5	0	1	0	4	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0016	2661	5	5	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0017	2661	4	4	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0018	2661	4	1	3	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0019	2661	3	1	2	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0020	2661	3	0	0	3	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0021	2661	3	0	1	0	0	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0022	2661	3	0	1	0	0	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0023	2661	2	0	2	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0024	2661	2	2	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0025	2661	2	0	1	0	1	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0026	2661	2	2	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0027	2661	2	0	2	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0028	2661	2	2	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0029	2661	1	0	0	0	1	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0030	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0031	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0032	2661	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0033	2661	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0034	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0035	2661	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0036	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0037	2661	1	0	0	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0038	2661	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0039	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0040	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0041	2661	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0042	2661	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0043	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0044	2661	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0045	2661	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	c0046	2661	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450