JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
E4F1_chr16_2218591_2240742	0/0	c0012	2355	1	0	0	0	0	1	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0013	2355	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0014	2355	1	0	0	1	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0015	2355	1	0	0	0	0	1	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0016	2355	1	0	0	1	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0017	2355	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0018	2355	1	0	0	0	0	1	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	1/0	c0019	2355	1	0	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0020	2355	1	1	0	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
E4F1_chr16_2218591_2240742	0/0	c0021	2355	1	0	1	0	0	0	copy fasta	E4F1	chr16	2218591	2240742
EAF1_chr3_15422598_15447613	1/1	c0001	807	292	67	54	132	8	29	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0002	807	88	3	13	52	3	17	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0003	807	17	14	1	2	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0004	807	7	6	1	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0005	807	5	5	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0006	807	3	3	0	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0007	807	3	0	0	3	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0008	782	1	0	1	0	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0009	807	1	0	0	0	1	0	copy fasta	EAF1	chr3	15422598	15447613
EAF1_chr3_15422598_15447613	0/0	c0010	807	1	0	0	1	0	0	copy fasta	EAF1	chr3	15422598	15447613
EAF2_chr3_121830209_121891526	1/1	c0001	783	223	65	57	55	14	30	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	c0002	783	84	14	15	48	0	7	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	c0003	783	3	0	0	3	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	c0004	783	2	2	0	0	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	c0005	783	2	2	0	0	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	c0006	783	2	2	0	0	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	c0007	783	1	0	0	0	0	1	copy fasta	EAF2	chr3	121830209	121891526
EAF2_chr3_121830209_121891526	0/0	c0008	783	1	1	0	0	0	0	copy fasta	EAF2	chr3	121830209	121891526
EAPP_chr14_34510938_34544701	1/1	c0001	858	282	68	44	125	11	32	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	c0002	858	57	9	15	24	2	7	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	c0003	858	19	15	1	1	1	1	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	c0004	858	1	0	1	0	0	0	copy fasta	EAPP	chr14	34510938	34544701
EAPP_chr14_34510938_34544701	0/0	c0005	858	1	0	1	0	0	0	copy fasta	EAPP	chr14	34510938	34544701
EARS2_chr16_23515754_23562350	0/1	c0001	1572	148	30	30	56	8	23	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	1/0	c0002	1572	84	18	8	40	7	10	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0003	1572	41	19	12	5	0	5	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0004	1572	2	0	0	2	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0005	1572	2	1	1	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0006	1572	2	2	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0007	1572	2	2	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0008	1572	1	0	0	0	1	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0009	1572	1	0	0	1	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0010	1572	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0011	1572	1	1	0	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EARS2_chr16_23515754_23562350	0/0	c0012	1572	1	0	1	0	0	0	copy fasta	EARS2	chr16	23515754	23562350
EBAG9_chr8_109535173_109570996	1/1	c0001	642	356	96	74	132	16	36	copy fasta	EBAG9	chr8	109535173	109570996
EBF1_chr5_158690920_159104916	0/0	c0001	1776	129	65	26	31	4	3	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	c0002	1776	64	15	23	15	6	5	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	c0003	1776	2	2	0	0	0	0	copy fasta	EBF1	chr5	158690920	159104916
EBF1_chr5_158690920_159104916	0/0	c0004	1776	1	0	1	0	0	0	copy fasta	EBF1	chr5	158690920	159104916