JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EBF2_chr8_25836725_26050413	0/1	c0001	1728	98	30	26	25	7	9	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	1/0	c0002	1728	90	12	20	39	5	13	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	c0003	1728	17	17	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	c0004	1728	11	11	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF2_chr8_25836725_26050413	0/0	c0005	1728	4	4	0	0	0	0	copy fasta	EBF2	chr8	25836725	26050413
EBF3_chr10_129830233_129969274	1/1	c0001	1890	302	91	50	114	11	34	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	c0002	1890	31	1	7	20	1	2	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	c0003	1890	2	2	0	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	c0004	1890	1	0	1	0	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	c0005	1890	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF3_chr10_129830233_129969274	0/0	c0006	1890	1	0	0	1	0	0	copy fasta	EBF3	chr10	129830233	129969274
EBF4_chr20_2687780_2765108	1/0	c0001	1809	157	26	44	61	12	13	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/1	c0002	1809	92	22	12	43	0	14	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0003	1809	73	23	8	33	2	7	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0004	1809	53	12	1	28	2	10	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0005	1809	5	5	0	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0006	1809	2	1	1	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0007	1809	2	2	0	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0008	1809	1	0	0	1	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0009	1809	1	0	0	1	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0010	1809	1	1	0	0	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBF4_chr20_2687780_2765108	0/0	c0011	1809	1	0	0	1	0	0	copy fasta	EBF4	chr20	2687780	2765108
EBI3_chr19_4224523_4242528	1/1	c0001	690	243	33	55	114	9	30	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0002	690	176	48	21	84	6	17	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0003	690	7	7	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0004	690	6	0	2	0	1	3	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0005	690	2	2	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0006	690	1	1	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0007	690	1	0	1	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0008	690	1	0	1	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBI3_chr19_4224523_4242528	0/0	c0009	690	1	1	0	0	0	0	copy fasta	EBI3	chr19	4224523	4242528
EBLN1_chr10_22203475_22223015	0/0	c0001	1101	268	21	45	156	15	31	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/1	c0002	1104	105	30	23	43	3	5	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0003	1104	18	16	2	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0004	1101	15	13	2	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0005	1101	4	4	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0006	1104	3	3	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0007	1104	3	3	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0008	1101	2	0	0	2	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0009	1101	2	0	0	0	0	2	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0010	1104	2	0	0	2	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0011	1086	1	0	1	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0012	1101	1	0	0	1	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0013	1101	1	0	0	1	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0014	1101	1	0	0	1	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0015	1129	1	0	1	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0016	1104	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0017	1104	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	0/0	c0018	1104	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN1_chr10_22203475_22223015	1/0	c0019	1101	1	0	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015