JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EBLN1_chr10_22203475_22223015	0/0	c0020	1104	1	1	0	0	0	0	copy fasta	EBLN1	chr10	22203475	22223015
EBLN2_chr3_73056659_73068337	1/0	c0001	819	163	9	45	96	3	9	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0002	820	104	8	5	77	1	13	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/1	c0003	819	94	46	17	13	2	15	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0004	819	38	30	1	5	0	2	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0005	819	9	0	7	2	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0006	823	5	0	2	0	1	2	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0007	820	3	0	0	3	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0008	819	3	3	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0009	820	2	0	0	0	1	1	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0010	819	2	2	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0011	819	2	0	0	0	0	2	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0012	819	2	2	0	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBLN2_chr3_73056659_73068337	0/0	c0013	819	1	0	1	0	0	0	copy fasta	EBLN2	chr3	73056659	73068337
EBNA1BP2_chr1_43159184_43177290	1/0	c0001	921	312	62	55	152	8	34	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/1	c0002	921	48	13	16	0	7	11	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	c0003	921	25	20	4	0	1	0	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	c0004	921	3	0	0	3	0	0	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	c0005	921	2	1	1	0	0	0	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	c0006	921	1	0	0	0	0	1	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBNA1BP2_chr1_43159184_43177290	0/0	c0007	921	1	0	0	1	0	0	copy fasta	EBNA1BP2	chr1	43159184	43177290
EBPL_chr13_49655674_49696486	1/1	c0001	621	404	95	81	170	8	48	copy fasta	EBPL	chr13	49655674	49696486
EBPL_chr13_49655674_49696486	0/0	c0002	621	3	0	1	0	2	0	copy fasta	EBPL	chr13	49655674	49696486
EBPL_chr13_49655674_49696486	0/0	c0003	621	1	0	0	1	0	0	copy fasta	EBPL	chr13	49655674	49696486
EBPL_chr13_49655674_49696486	0/0	c0004	634	1	0	0	1	0	0	copy fasta	EBPL	chr13	49655674	49696486
EBPL_chr13_49655674_49696486	0/0	c0005	621	1	1	0	0	0	0	copy fasta	EBPL	chr13	49655674	49696486
EBP_chrX_48516808_48533716	1/1	c0001	693	204	62	37	74	4	25	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	c0002	693	99	17	15	57	3	7	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	c0003	693	2	2	0	0	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	c0004	693	2	1	1	0	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	c0005	693	2	0	0	2	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	c0006	694	1	0	0	1	0	0	copy fasta	EBP	chrX	48516808	48533716
EBP_chrX_48516808_48533716	0/0	c0007	691	1	0	0	1	0	0	copy fasta	EBP	chrX	48516808	48533716
ECD_chr10_73128668_73173008	1/1	c0001	1935	154	42	20	72	0	18	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0002	1935	51	14	7	21	0	9	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0003	1935	30	0	1	29	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0004	1935	14	14	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0005	1935	7	5	2	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0006	1935	6	6	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0007	1935	2	0	0	2	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0008	1935	1	0	0	1	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0009	1935	1	0	0	1	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0010	1935	1	1	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0011	1935	1	1	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0012	1935	1	0	0	1	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0013	1935	1	1	0	0	0	0	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0014	1935	1	0	0	0	0	1	copy fasta	ECD	chr10	73128668	73173008
ECD_chr10_73128668_73173008	0/0	c0015	1935	1	0	0	1	0	0	copy fasta	ECD	chr10	73128668	73173008
ECE1_chr1_21212250_21295463	1/1	c0001	2313	206	50	30	87	8	29	copy fasta	ECE1	chr1	21212250	21295463
ECE1_chr1_21212250_21295463	0/0	c0002	2313	39	35	4	0	0	0	copy fasta	ECE1	chr1	21212250	21295463